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Jordan Lab Docs

Welcome to the Jordan Lab Documentation!

Jordan Lab Docs

Ancestry Inference Guide
Ancestry Inference Guide
- Workspace Setup
- Installations for Ancestry Inference
- Tidying the Data
  Tidying the Data
  - Quality Control
  - Data Harmonization
- Principal Component Analysis (PCA)
- Ancestry Inference Software
  Ancestry Inference Software
  - Using Admixture
  - Using Rye
- Plotting
  Plotting
  - Plotting
Integrated Risk Prediction Tool for Colorectal Cancer
Integrated Risk Prediction Tool for Colorectal Cancer
- Developing an Integrated Risk Prediction Tool for Colorectal Cancer
- Cohort used for the study
- Clinical risk factors
  Clinical risk factors
- Polygenic risk scores
  Polygenic risk scores
- Integrated risk score
  Integrated risk score

Welcome to the Jordan Lab Documentation!

Background

This is the home page for the Jordan Lab Documentation

Currently Documented:

Ancestry Inference:

Calculating ancestry inference estimates from Plink data

Integrated Risk Prediction

Integrated Risk Prediction Tool for Colorectal Cancer